[NeXus-committee] Fwd: Clarification on Sample Eiger 1M data
Herbert J. Bernstein
yayahjb at gmail.com
Tue Dec 16 17:48:28 GMT 2014
Sent from my iPad
Begin forwarded message:
> From: Stefan Brandstetter <stefan.brandstetter at dectris.com>
> Date: December 16, 2014 at 11:46:55 CST
> To: "Jemian, Pete R." <jemian at anl.gov>
> Cc: "Herbert J. Bernstein" <yayahjb at gmail.com>, Marcus Mueller <marcus.mueller at dectris.com>, "Graeme.Winter" <Graeme.Winter at diamond.ac.uk>, Richter Tobias <Tobias.Richter at diamond.ac.uk>, Mark Koennecke <mark.koennecke at psi.ch>, Mark Basham <Mark.Basham at diamond.ac.uk>
> Subject: Re: Clarification on Sample Eiger 1M data
>
> Dear Herbert, dear Pete, dear all,
>
> Thank you a lot for the Skype meeting today. It was very important for us to go through the points and we are glad that we are back in the discussion. The feedback about the definition of the mask (bit 16) we will send as soon as possible. Moreover, if you could add Marcus and me to your mailing list it would be great. Thanks. This would allow us to keep up to date with the developments.
>
> Concerning the meeting tomorrow at 8 pm (Swiss time) I'll send you an update during the day if one of us can join it.
>
> Kind regards,
> Stefan
>
>
>> On Mon, Dec 15, 2014 at 2:43 PM, Jemian, Pete R. <jemian at anl.gov> wrote:
>> Perfect. We'll send Skype details later today.
>>
>> Pete
>>
>>
>> Sent from my Samsung Galaxy Note® II
>>
>>
>>
>> -------- Original message --------
>> From: Stefan Brandstetter <stefan.brandstetter at dectris.com>
>> Date: 2014/12/15 7:26 AM (GMT-06:00)
>> To: "Herbert J. Bernstein" <yayahjb at gmail.com>
>> Cc: Marcus Mueller <marcus.mueller at dectris.com>,Dieter Schneider <schneider at bnl.gov>,Robert Sweet <rsweet at bnl.gov>,"Graeme.Winter" <Graeme.Winter at diamond.ac.uk>,Richter Tobias <Tobias.Richter at diamond.ac.uk>,Mark Koennecke <mark.koennecke at psi.ch>,Mark Basham <Mark.Basham at diamond.ac.uk>,"Jemian, Pete R." <jemian at anl.gov>
>> Subject: Re: Clarification on Sample Eiger 1M data
>>
>>
>> Dear Herbert, dear Pete, dear Mark,
>>
>> Thank you for your feedback. We are happy to Skype or phone in tomorrow. Would 10:30am Chicago time would work for you?
>>
>> Best regards,
>> Stefan
>>
>>
>>
>>> On Sun, Dec 14, 2014 at 3:31 AM, Herbert J. Bernstein <yayahjb at gmail.com> wrote:
>>> Dear Stefan,
>>>
>>> Pete Jemian is the host for the meeting. He has suggested this
>>> Tuesday morning for a Skype session to the meeting. I have added his
>>> email address to this message. I'll be traveling to APS tomorrow, so
>>> you should coordinate with Pete.
>>>
>>> Regards,
>>> Herbert
>>>
>>> On Sat, Dec 13, 2014 at 9:48 AM, Herbert J. Bernstein <yayahjb at gmail.com> wrote:
>>> > Dear Stefan,
>>> >
>>> > For 15-19 December, I will be at the NIAC 2014 meeting at APS, and I
>>> > expect that there will be discussions of these issues during that
>>> > meeting. I would suggest you arrange with Mark Koennecke and Pete
>>> > Jemian to have somebody from DECTRIS to Skype in or phone in for that
>>> > discussion.
>>> >
>>> > I'll be back in NY by 20 December. In view of the time difference
>>> > between NY and Baden, I would suggest we try to schedule one or more
>>> > Skype meetings at 8 am NY time on whatever days are workable after
>>> > that, and that we try to include at least Graeme Winter, Mark Basham
>>> > and Tobias Richter. Just to make a suggestion among many
>>> > possibilities, how about whichever Tuesday mornings at 8 am NY time we
>>> > have enough willing participants? I expect that it may take some time
>>> > to achieve a workable consensus.
>>> >
>>> > Regards,
>>> > Herbert
>>> >
>>> > On Sat, Dec 13, 2014 at 9:25 AM, Stefan Brandstetter
>>> > <stefan.brandstetter at dectris.com> wrote:
>>> >> Dear Herbert,
>>> >>
>>> >> Thank you for pointing out the details and the missing points.
>>> >>
>>> >> On the page considerations in Mapping DECTRIS Eiger data there were six
>>> >> questions.
>>> >> Questions 1, 4, and 5 are issues which will be fixed. The geometry, question
>>> >> 2, is well described via DectrisGeometryDocumentation.pdf . In question 3
>>> >> the NXmx application definition of the mask has partly definitions for the
>>> >> bits 5 - 31 as undefined. These bits are left open can be defined to a later
>>> >> point. Bit 6 and 8, however, could be added if necessary. It is not planed
>>> >> to use bit 31. Actually, it should be defined not to use it for such a mask,
>>> >> since its the sign bit. The necessary tags - point 6 - needs to be clearly
>>> >> documented.
>>> >>
>>> >> We aim to implement the adaptations of the generation of HDF5 files and the
>>> >> documentation of the tags till the end of January. This should then resolve
>>> >> currently existing differences.
>>> >> Could you please also tell me on which date and rough time we should arrange
>>> >> to join the skype meeting? Thanks.
>>> >>
>>> >> Kind regards,
>>> >> Stefan
>>> >>
>>> >>
>>> >>
>>> >> On Thu, Dec 11, 2014 at 4:12 AM, Herbert J. Bernstein <yayahjb at gmail.com>
>>> >> wrote:
>>> >>>
>>> >>> Dear Stefan,
>>> >>>
>>> >>> I have added a few more issues to the page. At this point it would
>>> >>> be very helpful if I could have access to the source code of the write
>>> >>> logic, so I could suggest fixes in terms of what really needs to be
>>> >>> fixed. In any case, I'll pause here to wait for your comments.
>>> >>>
>>> >>> I would be happy to sign a non-disclosure agreement as long as it
>>> >>> is understood that I am allowed to use code similar to my own patches
>>> >>> (not to your original code, just my own patches) in CBFlib as well.
>>> >>>
>>> >>> Regards,
>>> >>> Herbert
>>> >>>
>>> >>>
>>> >>>
>>> >>> On Wed, Dec 10, 2014 at 3:47 PM, Herbert J. Bernstein <yayahjb at gmail.com>
>>> >>> wrote:
>>> >>> > Dear Stefan,
>>> >>> >
>>> >>> > I have added a second point to the web site and will be adding more
>>> >>> > to that later tonight. You should have a reasonably complete first
>>> >>> > pass by Thursday morning NY time, early afternoon your time.
>>> >>> >
>>> >>> > Regards,
>>> >>> > Herbert
>>> >>> >
>>> >>> > On Wed, Dec 10, 2014 at 3:04 PM, Stefan Brandstetter
>>> >>> > <stefan.brandstetter at dectris.com> wrote:
>>> >>> >> Dear Herbert,
>>> >>> >>
>>> >>> >> Thank you for your mail and pointing this part out.
>>> >>> >> We will discuss this internally tomorrow or on Friday and I expect to
>>> >>> >> have
>>> >>> >> more details before the end of this week.
>>> >>> >>
>>> >>> >> Kind regards,
>>> >>> >> Stefan
>>> >>> >>
>>> >>> >>
>>> >>> >> On Mon, Dec 8, 2014 at 1:11 AM, Herbert J. Bernstein
>>> >>> >> <yayahjb at gmail.com>
>>> >>> >> wrote:
>>> >>> >>>
>>> >>> >>> Dear Stefan and Marcus,
>>> >>> >>>
>>> >>> >>> I am carefully going through the Eiger 1M data from September,
>>> >>> >>> mapping between what is in the sample data and the NeXus NXmx
>>> >>> >>> application definition. There is one issue in making the mapping work
>>> >>> >>> on which I would appreciate a clarification.
>>> >>> >>>
>>> >>> >>> The NeXus practice is use the attribute @NX_class for groups, not
>>> >>> >>> datasets. The sample Eiger 1M data has a series of datasets directly
>>> >>> >>> under entry:NXentry incorporated by external links where each link
>>> >>> >>> points to a dataset with an @NX_class attribute.
>>> >>> >>>
>>> >>> >>> If the Eiger data is to be normal NeXus data, I think we need to
>>> >>> >>> introduce either multiple data_000000n groups each with an
>>> >>> >>> @NX_class="NXdata" attribute to contain the relevant dataset, or at
>>> >>> >>> least to introduce one data;NX_class to contain the external links,
>>> >>> >>> rather than having them directly up in entry:NXentry.
>>> >>> >>>
>>> >>> >>> Is this difference intentional?
>>> >>> >>>
>>> >>> >>> I'll have a lot more detail on the concordance between the sample
>>> >>> >>> Eiger data and for the NIAC meeting at APS next week, but I thought
>>> >>> >>> this difference was significant enough to be worth bringing forward
>>> >>> >>> separately now, so we can all give it some thought and try to clarify
>>> >>> >>> it.
>>> >>> >>>
>>> >>> >>> I'll post everything I come up with before the APS NIAC meeting
>>> >>> >>>
>>> >>> >>> Regards,
>>> >>> >>> Herbert
>>> >>> >>>
>>> >>> >>>
>>> >>> >>> Structure of September 2014 DECTRIS Eiger !M sample data
>>> >>> >>>
>>> >>> >>> HDF5 "x1_insu_0p00125d_0p00125s_0p01beam_master.h5" {
>>> >>> >>> GROUP "/"
>>> >>> >>> GROUP "entry" {
>>> >>> >>> @NX_class="NXEntry"
>>> >>> >>> EXTERNAL_LINK "data_000001" {
>>> >>> >>> TARGETFILE
>>> >>> >>> "x1_insu_0p00125d_0p00125s_0p01beam_data_000001.h5"
>>> >>> >>> TARGETPATH "/entry/data"
>>> >>> >>> }
>>> >>> >>> EXTERNAL_LINK "data_000002" {
>>> >>> >>> TARGETFILE
>>> >>> >>> "x1_insu_0p00125d_0p00125s_0p01beam_data_000002.h5"
>>> >>> >>> TARGETPATH "/entry/data"
>>> >>> >>> }
>>> >>> >>>
>>> >>> >>> HDF5
>>> >>> >>>
>>> >>> >>> "/home/hbernstein/data_15Sep14/EIGER_x1_insu_800Hz/x1_insu_0p00125d_0p00125s_0p01beam_data_000001.h5"
>>> >>> >>> {
>>> >>> >>> GROUP "/" {
>>> >>> >>> GROUP "entry"
>>> >>> >>> @NX_class="NXEntry"
>>> >>> >>> DATASET "data" [1000:..., 1065, 1030]{ }
>>> >>> >>> @NX_class="NXdata"
>>> >>> >>> @image_nr_high=1000
>>> >>> >>> @image_nr_low=1
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >> --
>>> >>> >> *******************************************
>>> >>> >> Stefan Brandstetter, Ph.D.
>>> >>> >> Head of Commissioning and Support
>>> >>> >>
>>> >>> >> DECTRIS Ltd.
>>> >>> >> Neuenhoferstr. 107
>>> >>> >> 5400 Baden
>>> >>> >> Switzerland
>>> >>> >>
>>> >>> >> +41 56 500 21 00 phone
>>> >>> >> +41 56 500 21 40 direct
>>> >>> >> +41 56 500 21 01 fax
>>> >>> >> stefan.brandstetter at dectris.com
>>> >>> >> www.dectris.com
>>> >>> >>
>>> >>> >> Don´t miss the latest developments,
>>> >>> >> subscribe to the DECTRIS eNewsletter
>>> >>> >> **********************************************************
>>> >>> >>
>>> >>> >>
>>> >>> >> *Confidentiality Note
>>> >>> >> *This message is intended only for the use of the named recipient(s)
>>> >>> >> and may contain confidential and/or privileged information. If you are
>>> >>> >> not the intended recipient, please contact the sender and delete the
>>> >>> >> message. Any unauthorized use of the information contained in this
>>> >>> >> message is prohibited.
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>
>>> >>
>>> >>
>>> >> --
>>> >> *******************************************
>>> >> Stefan Brandstetter, Ph.D.
>>> >> Head of Commissioning and Support
>>> >>
>>> >> DECTRIS Ltd.
>>> >> Neuenhoferstr. 107
>>> >> 5400 Baden
>>> >> Switzerland
>>> >>
>>> >> +41 56 500 21 00 phone
>>> >> +41 56 500 21 40 direct
>>> >> +41 56 500 21 01 fax
>>> >> stefan.brandstetter at dectris.com
>>> >> www.dectris.com
>>> >>
>>> >> Don´t miss the latest developments,
>>> >> subscribe to the DECTRIS eNewsletter
>>> >> **********************************************************
>>> >>
>>> >>
>>> >> *Confidentiality Note
>>> >> *This message is intended only for the use of the named recipient(s)
>>> >> and may contain confidential and/or privileged information. If you are
>>> >> not the intended recipient, please contact the sender and delete the
>>> >> message. Any unauthorized use of the information contained in this
>>> >> message is prohibited.
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>> >>
>>
>>
>> --
>> *******************************************
>> Stefan Brandstetter, Ph.D.
>> Head of Commissioning and Support
>>
>> DECTRIS Ltd.
>> Neuenhoferstr. 107
>> 5400 Baden
>> Switzerland
>>
>> +41 56 500 21 00 phone
>> +41 56 500 21 40 direct
>> +41 56 500 21 01 fax
>> stefan.brandstetter at dectris.com
>> www.dectris.com
>>
>> Don´t miss the latest developments,
>> subscribe to the DECTRIS eNewsletter
>> **********************************************************
>>
>>
>> *Confidentiality Note
>> *This message is intended only for the use of the named recipient(s)
>> and may contain confidential and/or privileged information. If you are
>> not the intended recipient, please contact the sender and delete the
>> message. Any unauthorized use of the information contained in this
>> message is prohibited.
>>
>>
>>
>>
>>
>>
>>
>
>
> --
> *******************************************
> Stefan Brandstetter, Ph.D.
> Head of Commissioning and Support
>
> DECTRIS Ltd.
> Neuenhoferstr. 107
> 5400 Baden
> Switzerland
>
> +41 56 500 21 00 phone
> +41 56 500 21 40 direct
> +41 56 500 21 01 fax
> stefan.brandstetter at dectris.com
> www.dectris.com
>
> Don´t miss the latest developments,
> subscribe to the DECTRIS eNewsletter
> **********************************************************
>
>
> *Confidentiality Note
> *This message is intended only for the use of the named recipient(s)
> and may contain confidential and/or privileged information. If you are
> not the intended recipient, please contact the sender and delete the
> message. Any unauthorized use of the information contained in this
> message is prohibited.
>
>
>
>
>
>
>
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